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Aptamer Screening Service

Aptamer Screening ServiceIntroduction

KMD Bioscience offers one-stop in vitro aptamer selection services leveraging our well-established Systematic Evolution of Ligands by Exponential Enrichment (SELEX) platform. We perform high-throughput screening against diverse target types to identify aptamers with high affinity and exceptional specificity, enabling our clients to accelerate research programs while reducing development costs.

Aptamers are single-stranded DNA or RNA oligonucleotides typically 20–80 nucleotides in length. Through intramolecular folding, they adopt precise three-dimensional conformations such as hairpins, G-quadruplexes, and pseudoknots, enabling specific recognition of target molecules with dissociation constants (Kd) ranging from nanomolar to picomolar levels—hence they are often referred to as "chemical antibodies." RNA aptamers, owing to the presence of the 2'-hydroxyl group on ribose, exhibit greater conformational diversity and binding flexibility, whereas DNA aptamers offer superior chemical stability and ease of synthesis and modification. The choice between RNA and DNA formats can be tailored to the target characteristics and downstream application requirements.

Aptamers have found broad applications in basic life science research, clinical in vitro diagnostics, targeted drug development, and biosensing. KMD Bioscience provides a comprehensive end-to-end service covering random library design, iterative binding selection and enrichment, high-throughput sequencing analysis, and affinity/specificity validation. In addition to classical targets such as proteins and small molecules, we also support customized strategies including cell-based differential selection (Cell-SELEX), which enables precise identification of molecular signatures distinguishing different cellular phenotypes, thereby accommodating diverse research needs.


Systematic Evolution of Ligands by EXponential Enrichment(SELEX)

SELEX is an in vitro selection methodology widely employed to isolate single-stranded DNA or RNA oligonucleotides—referred to as aptamers—that bind with high specificity to target ligands from random synthetic nucleic acid libraries. The standard SELEX workflow comprises the following key steps: (1) in vitro chemical synthesis of an initial random single-stranded oligonucleotide library; (2) co-incubation of the random library with the target molecule to form nucleic acid–target complexes; (3) removal of unbound nucleic acid molecules that do not associate with the target ligand; (4) elution of the bound aptamers; (5) amplification of the eluted aptamers via PCR to generate an enriched sub-library for the subsequent round; and (6) repetition of steps (2)–(5) to progressively enrich for aptamers with high affinity and specificity toward the target ligand, enabling rapid identification of candidate binding molecules.

KMD Bioscience leverages a well-established SELEX technology platform to provide aptamer selection services against a broad spectrum of target types, including proteins, peptides, small molecules, and intact cells, delivering high-quality candidate aptamers efficiently. Clients need only supply the target protein, corresponding gene sequence, or accession number; we then perform the entire workflow, including SDS-PAGE quality control of the target protein, nucleic acid library preparation, iterative rounds of selection, next-generation sequencing (NGS) data analysis, and synthesis of candidate aptamers—all in a comprehensive, integrated service package.

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Figure 1. Typical SELEX Procedure

In the typical SELEX protocol diagram, the logic of negative and positive selection is sometimes inverted:

Negative selection should be: discard the bound non‑specific sequences and collect the unbound nucleic acids for the next step.

Positive selection should be: wash away the unbound nucleic acids and retain those bound to the target.

Service Scope

KMD Bioscience offers the following services:

-- Protein‑based SELEX services for aptamer development

--Whole‑cell‑based SELEX services for aptamer development

--In vivo (animal‑based) SELEX services for aptamer development

--Dual‑aptamer pairing development services


Service Content

Service Item

Content

Timeline

Library Screening

*Incubation with target, elution and amplification of bound sequences;

Repeat above steps for 6–8 rounds (additional rounds may be added under special circumstances)

6–8 weeks

NGS Sequencing

*Acquisition of candidate sequence information via NGS sequencing, bioinformatics, and biophysical methods

2 weeks

Aptamer Synthesis

*High‑quality aptamer synthesis and purification by HPLC, with MS report provided

1 week

Modification

*Different modification methods are selected based on specific needs and applications, such as biotin, 5'‑NH₂, 5'‑thiol, fluorescent dyes, etc.

2 weeks

Affinity Determination

*BLI, SPR and other technologies for KD measurement

1 week


Customer-Provided

Sample

Requirements

Proteins

* Large tag included

* Buffer devoid of free amino groups

* PBS buffer preferred

* Tris-containing buffers excluded

* Purity > 95%

* Amount: 0.5-1 mg

* Concentration: 1 mg/mL

Small Molecules

* Good water solubility (>1 mM)

* Stable (resistant to oxidation, decomposition, etc.)

* Low dilution heat

* Purity > 95%

* Amount: ≥ 10 mg

Cells and Bacteria

Contact us for consultation

Delivery Content

--A comprehensive experimental report and the client-specified aptamer sequences.

Service Advantage

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